您的条件OnlineUseage是左侧联接变得像内部联接。
将您的条件移至该from子句会更好：
SELECT
users.Name,
users.ID,
IFNULL(SUM(users.Minutes), 0) AS MinutesOnline
FROM
users
LEFT JOIN OnlineUseage ON
OnlineUseage.ID = users.ID and
OnlineUseage.Date >= '2016-01-01 00:00:00' AND
OnlineUseage.Date <= '2016-12-31 23:59:59'
WHERE
users.ID IN (332,554,5764,11,556,.........)
GROUP BY
users.ID,users.Name
ORDER BY
users.ID
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